Install Clustal Omega from source code
This procedure is based on M1 Mac.
Download the source code and extract:
wget http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz && tar -xzvf clustal-omega-1.2.4.tar.gz && cd clustal-omega-1.2.4
Install argtable with Homebrew:
# You need install the Homebrew first if you haven't installed it. /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)" brew install argtable
Compile and install:
./configure CFLAGS='-I/opt/homebrew/Cellar/argtable/2.13/include' LDFLAGS='-L/opt/homebrew/Cellar/argtable/2.13/lib' make make install
Check the installation:
which clustalo
Then you can use it with:
cd /path/to/your/sequence clustalo -i sequence.fasta -o output.fasta --seqtype=protein